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1.
Characterization of protein residue surface accessibility using sequence homology
by Mishra, Radhika Pallavi, M.S.  San Jose State University. 2010: 155 pages; 1477358.
2.
Protein domain mimetics as in vivo modulators of transcription
by Bullock, Brooke Nichole, Ph.D.  New York University. 2014: 317 pages; 3635101.
3.
Computational Design of Protein-Ligand Interfaces Using RosettaLigand
by Allison, Brittany Ann, Ph.D.  Vanderbilt University. 2016: 155 pages; 13834927.
5.
Computational Studies of Proteins: Dynamics and Interactions with Small Molecules
by Park, Min Sun, Ph.D.  University of Rochester. 2011: 109 pages; 3458547.
8.
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Computational and experimental investigation of allosteric communication in the transcriptional regulator NikR
by Bradley, Michael John, Ph.D.  Washington University in St. Louis. 2009: 202 pages; 3387550.
10.
Computational Studies of Protein-Inhibitor Interactions
by Mohammadi, Mohammadjavad, Ph.D.  University of New Hampshire. 2019: 258 pages; 13885097.
12.
Localizing and quantifying evolutionary selective pressures
by Eames, Matt, Ph.D.  University of California, San Francisco. 2010: 105 pages; 3412277.
14.
Interactions between RNA and Argonaute protein in RNAi and translational repression
by Hur, Junho, Ph.D.  The Johns Hopkins University. 2012: 151 pages; 3528555.
17.
Tryptophantastic: Short peptides with stable folds
by Kier, Brandon Lee, Ph.D.  University of Washington. 2009: 217 pages; 3394205.
18.
Beyond the Model and Into the Map: A Protein Abstract
by Fraser, James Solomon, Ph.D.  University of California, Berkeley. 2010: 104 pages; 3556045.
19.
Oligomerization of the LysR-type transcriptional regulators in Escherichia coli
by Knapp, Gwendowlyn Sue, Ph.D.  Texas A&M University. 2008: 163 pages; 3321969.
20.
The structure of a three helix membrane protein in a lipid bilayer
by Murray, Dylan T., Ph.D.  The Florida State University. 2014: 223 pages; 3625912.
21.
Statistical models for analyzing human genetic variation
by Sankararaman, Sriram, Ph.D.  University of California, Berkeley. 2010: 164 pages; 3413553.
23.
Characterization of the Gifsy-1 phage excisionase
by Flanigan, Asa, Ph.D.  University of Illinois at Urbana-Champaign. 2008: 127 pages; 3337779.
25.
Determinants of electrostatic energies and pKa values in proteins
by Castaneda, Carlos A., Ph.D.  The Johns Hopkins University. 2009: 207 pages; 3339886.
26.
Investigating the Role of Glutamate 97 in Triosephosphate Isomerase from Homo sapiens
by Colquhoun, Anh N., M.S.  California State University, Long Beach. 2018: 75 pages; 10976077.
28.
Surface-induced peptide folding
by Capriotti, Lisa A., Ph.D.  University of Delaware. 2009: 346 pages; 3360285.
30.
Anthrax lethal toxin unfolding and translocation via a charge-state ratchet
by Brown, Michael Joseph, Ph.D.  University of California, Berkeley. 2013: 104 pages; 3720396.
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