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1.
Improving Multiple Sequence Alignments by Revising Sequence Families with Alignment Scoring Approaches
by Levchuk, Aleksandr Olegovich, M.S.  University of California, Riverside. 2011: 72 pages; 1505602.
3.
Efficient construction of accurate multiple alignments and large-scale phylogenies
by Wheeler, Travis John, Ph.D.  The University of Arizona. 2009: 185 pages; 3369689.
4.
Clustering, searching and evaluating biological sequence data
by Ghodsi, Mohammadreza, Ph.D.  University of Maryland, College Park. 2012: 104 pages; 3543455.
5.
Characterization of protein residue surface accessibility using sequence homology
by Mishra, Radhika Pallavi, M.S.  San Jose State University. 2010: 155 pages; 1477358.
6.
Structural RNA homology search and alignment using covariance models
by Nawrocki, Eric Paul, Ph.D.  Washington University in St. Louis. 2009: 281 pages; 3372748.
7.
A flexible comparative genomics framework for integrating heterogeneous sequence data
by Regier, Allison Ann Penner, Ph.D.  University of Notre Dame. 2011: 102 pages; 3496613.
8.
Statistical phylogenetic methods with applications to virus evolution
by Westesson, Oscar, Ph.D.  University of California, Berkeley. 2012: 258 pages; 3555992.
9.
Analyzing comparative sequence data to understand genome function and evolution
by Prasad, Arjun B., Ph.D.  The George Washington University. 2010: 223 pages; 3389713.
11.
Strategic objectives, alignments, and firm performance
by Chen, Kun, Ph.D.  Kent State University. 2014: 104 pages; 3618905.
12.
13.
Intron position in RNA polymerase genes and their relationship to eukaryotic phylogenies
by Robinson, Matthew C., M.S.  East Carolina University. 2010: 90 pages; 1484138.
14.
Algorithms for biological network alignment
by Flannick, Jason, Ph.D.  Stanford University. 2009: 152 pages; 3343954.
15.
Novel algorithms for structural alignment of non-coding RNAs
by Kolbe, Diana Lynn, Ph.D.  Washington University in St. Louis. 2010: 175 pages; 3408095.
16.
Syntactic Agreement in Bilingual Corpora
by Burkett, David Ernesto, Ph.D.  University of California, Berkeley. 2012: 73 pages; 3555595.
17.
Structure-Preserving Rearrangements: Algorithms for Structural Comparison and Protein Analysis
by Bliven, Spencer Edward, Ph.D.  University of California, San Diego. 2015: 159 pages; 3716489.
18.
Remote Homology Detection in Proteins Using Graphical Models
by Daniels, Noah Manus, Ph.D.  Tufts University. 2013: 122 pages; 3563611.
20.
The structural and functional landscape of protein superfamilies: From the thioredoxin fold to parasite peptidases
by Atkinson, Holly J., Ph.D.  University of California, San Francisco. 2009: 159 pages; 3359576.
21.
Ambiguous fragment assignment for high-throughput sequencing experiments
by Roberts, Adam, Ph.D.  University of California, Berkeley. 2013: 93 pages; 3616509.
22.
The Yalahau Regional Wetland Survey: Ancient Maya Land Use in Northern Quintana Roo, Mexico
by Leonard, Daniel Ian, Ph.D.  University of California, Riverside. 2013: 694 pages; 3600580.
24.
Pre-mRNA Architecture and Sequence Element Regulation of Alternative Splicing
by Mueller, William F., Ph.D.  University of California, Irvine. 2013: 176 pages; 3557196.
25.
Two case studies of protein fold evolution: Bacteriophage Cro proteins and insect salivary lipocalins
by Roessler, Christian George, Ph.D.  The University of Arizona. 2010: 199 pages; 3432603.
26.
The human gut microbiota: New analyses and methods on the continuum between disease and health
by Hartman, Amber Laura, Ph.D.  The Johns Hopkins University. 2009: 216 pages; 3399101.
27.
Sequence Determination of Novel Plasmids in Rickettsia spp. and Identification of the Necessary Components for Autonomous Replication
by Rayburn, Emma, M.S.  University of North Texas Health Science Center at Fort Worth. 2012: 91 pages; 1602716.
29.
Evolution and Function of Compositional Patterns in Mammalian Genomes
by Prakash, Ashwin, Ph.D.  The University of Toledo. 2011: 185 pages; 3490731.
30.
Analysis of aberrant and normal copy-number variation of human chromosome 22
by Urban, Alexander Eckehart, Ph.D.  Yale University. 2007: 126 pages; 3293411.
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