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Multi-Class Computational Evolution: Development, Benchmark Comparison, and Application to RNA-Seq Biomarker Discovery
by Crabtree, Nathaniel Mark, Ph.D.  University of Arkansas at Little Rock. 2017: 106 pages; 10620232.
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gibbSeq: A new Bayesian method for multiple comparisons for RNA-seq data
by Acheampong, Daniel Asare, M.S.  New Mexico Institute of Mining and Technology. 2017: 77 pages; 10264015.
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Inferring dinoflagellate genome structure, function, and evolution from short-read high-throughput RNA-Seq
by Gibbons, Theodore Robert, Ph.D.  University of Maryland, College Park. 2015: 132 pages; 10011582.
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The role of read depth in the design and analysis of sequencing experiments
by Robinson, David Garrett, Ph.D.  Princeton University. 2015: 164 pages; 3713946.
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Generalized Adaptive Shrinkage Methods and Applications in Genomics Studies
by Lu, Mengyin, Ph.D.  The University of Chicago. 2018: 129 pages; 10974422.
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Trancriptome profiling of bovine milk with special emphasis on oligosaccharide metabolism genes
by Wickramasinghe, Saumya, Ph.D.  University of California, Davis. 2011: 206 pages; 3502360.
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RNA Splicing Regulation in Drosophila melanogaster
by Brooks, Angela Norie, Ph.D.  University of California, Berkeley. 2011: 118 pages; 3473874.
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Ambiguous fragment assignment for high-throughput sequencing experiments
by Roberts, Adam, Ph.D.  University of California, Berkeley. 2013: 93 pages; 3616509.
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Robust Inference and Network Analysis for Non-Gaussian Gene-Expression Data
by Specht, Alicia T., Ph.D.  University of Notre Dame. 2017: 126 pages; 13836379.
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Acute Hypertrophic Changes of Muscle Structural Proteins after Functional Overload
by Uapinyoying, Prech Brian, Ph.D.  The George Washington University. 2018: 211 pages; 10747093.
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Genomic Alterations in Bladder Cancer Modulate Response to Therapy
by Ramirez, Ricardo, Ph.D.  Weill Medical College of Cornell University. 2017: 134 pages; 10252704.
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Assembling improved gene annotations in Clostridium acetobutylicum with RNA sequencing
by Ralston, Matthew T., M.S.  University of Delaware. 2015: 152 pages; 1585177.
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Phylogenomic Analysis of Fundulidae Using RNA-Sequencing Data
by Rodgers, Rachel, M.S.  Southern Illinois University at Edwardsville. 2017: 72 pages; 10265232.
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A Motif Discovery and Analysis Pipeline for Heterogeneous Next-Generation Sequencing Data
by Ramsay, Trevor, M.S.  University of California, Davis. 2015: 72 pages; 1599520.
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Investigating susceptibility to tuberculosis using functional genomics approaches
by Blischak, John David, Ph.D.  The University of Chicago. 2016: 194 pages; 10238063.
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Phylogenomic Framework of the Plant Family Acanthaceae
by Arias, Joshua Daniel, M.S.  California State University, Long Beach. 2019: 95 pages; 13899203.
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Genomic Approaches Reveal the Interplay of Viral and Cellular Transcription During Infection
by Peralta, Zuleyma, Ph.D.  Icahn School of Medicine at Mount Sinai. 2017: 195 pages; 10639303.
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Phylogenomics, Systematics, and Evolution within the Nudibranch Group Cladobranchia (Mollusca: Gastropoda)
by Goodheart, Jessica Ann Marie, Ph.D.  University of Maryland, College Park. 2017: 330 pages; 10640279.
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Mechanisms of fluconazole resistance in Candida parapsilosis clinical isolates
by Wanamaker, Eileen B., M.S.  University of Cincinnati. 2013: 90 pages; 1548564.
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STAT3 Promotes Aggressive Tumorigenesis in Diffuse Large B Cell Lymphoma
by Hardee, Jennifer Marion, Ph.D.  Yale University. 2012: 131 pages; 3535398.
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