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3.
Inferring dinoflagellate genome structure, function, and evolution from short-read high-throughput RNA-Seq
by Gibbons, Theodore Robert, Ph.D.  University of Maryland, College Park. 2015: 132 pages; 10011582.
4.
gibbSeq: A new Bayesian method for multiple comparisons for RNA-seq data
by Acheampong, Daniel Asare, M.S.  New Mexico Institute of Mining and Technology. 2017: 77 pages; 10264015.
5.
Multi-Class Computational Evolution: Development, Benchmark Comparison, and Application to RNA-Seq Biomarker Discovery
by Crabtree, Nathaniel Mark, Ph.D.  University of Arkansas at Little Rock. 2017: 106 pages; 10620232.
7.
Development and Application of Computational Tools for RNA-Seq Based Transcriptome Annotations
by Yu, Sung-Huan, Ph.D.  Bayerische Julius-Maximilians-Universitaet Wuerzburg (Germany). 2019: 162 pages; 13867996.
8.
Enabling Data-Guided Evaluation of Bioinformatics Workflow Quality
by McDade, Kevin Kristopher, Ph.D.  University of Pittsburgh. 2017: 160 pages; 10645872.
9.
Building a Better Transcriptome
by Byrne, Ashley L., Ph.D.  University of California, Santa Cruz. 2019: 204 pages; 27669664.
10.
RNA-protein structure classifiers incorporated into second-generation statistical potentials
by Kimura, Takayuki, M.S.  San Jose State University. 2016: 145 pages; 10241445.
12.
Noncoding Genetic Variants in Congenital Heart Disease
by Richter, Felix, Ph.D.  Icahn School of Medicine at Mount Sinai. 2019: 103 pages; 13877496.
13.
Multiscale Modeling of Oligodendrocytes and Myelin in Alzheimer's Disease
by McKenzie, Andrew Thomas, Ph.D.  Icahn School of Medicine at Mount Sinai. 2017: 263 pages; 10284858.
16.
Investigating susceptibility to tuberculosis using functional genomics approaches
by Blischak, John David, Ph.D.  The University of Chicago. 2016: 194 pages; 10238063.
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The evolution of gene regulation in primates
by Blekhman, Ran, Ph.D.  The University of Chicago. 2010: 158 pages; 3397288.
19.
Phylogenomic Analysis of Fundulidae Using RNA-Sequencing Data
by Rodgers, Rachel, M.S.  Southern Illinois University at Edwardsville. 2017: 72 pages; 10265232.
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Improving Fibroblast to Neuron Reprogramming through Engineering of the Cell Microenvironment
by Kelkhoff, Douglas Oscar, Ph.D.  University of California, Berkeley. 2016: 147 pages; 10192772.
26.
Genomic Approaches Reveal the Interplay of Viral and Cellular Transcription During Infection
by Peralta, Zuleyma, Ph.D.  Icahn School of Medicine at Mount Sinai. 2017: 195 pages; 10639303.
27.
Investigating the Mechanisms of in vivo Cellular Reprogramming and Transorganogenesis in Caenorhabditis elegans
by Spickard, Erik Anthony, Ph.D.  University of California, Santa Barbara. 2019: 229 pages; 27663987.
28.
RNA Splicing Regulation in Drosophila melanogaster
by Brooks, Angela Norie, Ph.D.  University of California, Berkeley. 2011: 118 pages; 3473874.
29.
Comparative Analysis of Long-Read Transcriptome Assembly Pipelines
by Dubocanin, Danilo , M.S.  University of California, Santa Cruz. 2020: 38 pages; 28092891.
30.
Assembling improved gene annotations in Clostridium acetobutylicum with RNA sequencing
by Ralston, Matthew T., M.S.  University of Delaware. 2015: 152 pages; 1585177.
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