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1.
2.
Phylogenomic Analysis of Fundulidae Using RNA-Sequencing Data
by Rodgers, Rachel, M.S.  Southern Illinois University at Edwardsville. 2017: 72 pages; 10265232.
3.
Quantifying Nucleotide Variation in RNA Virus Populations by Next-generation Sequencing
by Fedewa, Gregory, Ph.D.  University of California, San Francisco. 2018: 69 pages; 10936274.
4.
Assembling improved gene annotations in Clostridium acetobutylicum with RNA sequencing
by Ralston, Matthew T., M.S.  University of Delaware. 2015: 152 pages; 1585177.
7.
The role of read depth in the design and analysis of sequencing experiments
by Robinson, David Garrett, Ph.D.  Princeton University. 2015: 164 pages; 3713946.
8.
Ambiguous fragment assignment for high-throughput sequencing experiments
by Roberts, Adam, Ph.D.  University of California, Berkeley. 2013: 93 pages; 3616509.
9.
Development of Computational Tools to Analyze New Experimental Technologies for the Study of Noncoding RNA
by Schoenberg, Michael Rutenberg, Ph.D.  Yale University. 2019: 222 pages; 13810036.
10.
A Motif Discovery and Analysis Pipeline for Heterogeneous Next-Generation Sequencing Data
by Ramsay, Trevor, M.S.  University of California, Davis. 2015: 72 pages; 1599520.
12.
Poisson multiscale methods for high-throughput sequencing data
by Xing, Zhengrong, Ph.D.  The University of Chicago. 2016: 229 pages; 10195268.
14.
Multi-Class Computational Evolution: Development, Benchmark Comparison, and Application to RNA-Seq Biomarker Discovery
by Crabtree, Nathaniel Mark, Ph.D.  University of Arkansas at Little Rock. 2017: 106 pages; 10620232.
15.
gibbSeq: A new Bayesian method for multiple comparisons for RNA-seq data
by Acheampong, Daniel Asare, M.S.  New Mexico Institute of Mining and Technology. 2017: 77 pages; 10264015.
19.
Inferring dinoflagellate genome structure, function, and evolution from short-read high-throughput RNA-Seq
by Gibbons, Theodore Robert, Ph.D.  University of Maryland, College Park. 2015: 132 pages; 10011582.
20.
Robust Inference and Network Analysis for Non-Gaussian Gene-Expression Data
by Specht, Alicia T., Ph.D.  University of Notre Dame. 2017: 126 pages; 13836379.
21.
Genome-Wide Analysis of Plant Heterochromatic Short-Interfering RNAs
by Wang, Feng, Ph.D.  The Pennsylvania State University. 2017: 141 pages; 13918164.
22.
Trancriptome profiling of bovine milk with special emphasis on oligosaccharide metabolism genes
by Wickramasinghe, Saumya, Ph.D.  University of California, Davis. 2011: 206 pages; 3502360.
23.
A-U, G-C; How Complicated Can It Be? Protein-RNA Interactions in Telomerase
by Palka, Christina, Ph.D.  University of California, Santa Cruz. 2019: 128 pages; 22622630.
25.
The effect of component base pairs on the stability of Potato Spindle Tuber Viroid (PSTVd) loop E RNA
by Salvo, Renee M., Ph.D.  University of the Sciences in Philadelphia. 2017: 168 pages; 10585744.
27.
Genome Assembly: Novel Applications by Harnessing Emerging Sequencing Technologies and Graph Algorithms
by Koren, Sergey, Ph.D.  University of Maryland, College Park. 2012: 238 pages; 3517547.
28.
Control of RNA Structure by CspA Proteins in Rhizobia
by Peele Price, Jason, Ph.D.  Washington State University. 2017: 189 pages; 10605605.
29.
Maize RNA Polymerase IV Complexes and Their Control of Gene Function
by Talbot, Joy-El Renee Barbour, Ph.D.  University of California, Berkeley. 2015: 178 pages; 10187182.
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