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1.
Assembling improved gene annotations in Clostridium acetobutylicum with RNA sequencing
by Ralston, Matthew T., M.S.  University of Delaware. 2015: 152 pages; 1585177.
3.
Small RNA regulation during Phytophthora sojae infection in soybean
by Wong, James Tac, Ph.D.  University of California, Riverside. 2013: 205 pages; 3610971.
4.
RNA Splicing Regulation in Drosophila melanogaster
by Brooks, Angela Norie, Ph.D.  University of California, Berkeley. 2011: 118 pages; 3473874.
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Interrogating Genetic Diversity in Mycobacterium abscessus with Transposon-Sequencing
by Akusobi, Chidi Daniels, Ph.D.  Harvard University. 2020: 195 pages; 28095112.
7.
Phylogenomic Analysis of Fundulidae Using RNA-Sequencing Data
by Rodgers, Rachel, M.S.  Southern Illinois University at Edwardsville. 2017: 72 pages; 10265232.
8.
Genetics Characterization of Antiviral RNA Interference in Caenorhabditis elegans
by Zhong, Jing, Ph.D.  University of California, Riverside. 2014: 141 pages; 3644055.
9.
Quantifying Nucleotide Variation in RNA Virus Populations by Next-generation Sequencing
by Fedewa, Gregory, Ph.D.  University of California, San Francisco. 2018: 69 pages; 10936274.
10.
The effect of component base pairs on the stability of Potato Spindle Tuber Viroid (PSTVd) loop E RNA
by Salvo, Renee M., Ph.D.  University of the Sciences in Philadelphia. 2017: 168 pages; 10585744.
11.
Development and Application of Computational Tools for RNA-Seq Based Transcriptome Annotations
by Yu, Sung-Huan, Ph.D.  Bayerische Julius-Maximilians-Universitaet Wuerzburg (Germany). 2019: 162 pages; 13867996.
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Using RNA Mimicry of Viroids to Uncover New Noncoding RNA Structural Motifs and Pathways
by Freidhoff, Paul, Ph.D.  University of the Sciences in Philadelphia. 2020: 186 pages; 27665966.
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The Role of RNA Binding Proteins in Motoneuron Diseases
by Sivadasan, Rajeeve, Ph.D.  Bayerische Julius-Maximilians-Universitaet Wuerzburg (Germany). 2016: 148 pages; 10733086.
17.
Investigating the Origin and Functions of a Novel Small RNA in Escherichia coli
by Kacharia, Fenil Rashmin, M.S.  Portland State University. 2016: 61 pages; 10157423.
18.
The role of read depth in the design and analysis of sequencing experiments
by Robinson, David Garrett, Ph.D.  Princeton University. 2015: 164 pages; 3713946.
19.
Role of RNA Helicases in the Drosophila Germline
by Blatt, Patrick, Ph.D.  State University of New York at Albany. 2021: 202 pages; 28320090.
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Ambiguous fragment assignment for high-throughput sequencing experiments
by Roberts, Adam, Ph.D.  University of California, Berkeley. 2013: 93 pages; 3616509.
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A Motif Discovery and Analysis Pipeline for Heterogeneous Next-Generation Sequencing Data
by Ramsay, Trevor, M.S.  University of California, Davis. 2015: 72 pages; 1599520.
28.
Poisson multiscale methods for high-throughput sequencing data
by Xing, Zhengrong, Ph.D.  The University of Chicago. 2016: 229 pages; 10195268.
30.
Insights into the mechanisms of HIV-1 cis elements and trans factors required for RNA encapsidation and transduction
by Cockrell, Adam, Ph.D.  The University of North Carolina at Chapel Hill. 2011: 192 pages; 3495465.
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