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1.
Applying Evolutionary Computation and Ensemble Approaches to Protein Contact Map and Protein Function Determination
by Chapman, Samuel D., Ph.D.  North Carolina Agricultural and Technical State University. 2016: 153 pages; 10191042.
2.
Structure Prediction and Variant Interpretation of Membrane Proteins Aided by Machine Learning Algorithms
by Li, Bian, Ph.D.  Vanderbilt University. 2018: 192 pages; 13917125.
3.
Structure Prediction and Design of Enzymes
by Contreras, Stephanie Cynthia, Ph.D.  University of California, Davis. 2019: 91 pages; 13902145.
5.
Leveraging Novel Information for Coarse-Grained Prediction of Protein Motion
by Putz, Ines, Ph.D.  Technische Universitaet Berlin (Germany). 2018: 185 pages; 27610097.
6.
The evolution of protein folds from the perspective of structure motifs
by Dybas, Joseph M., Ph.D.  Yeshiva University. 2015: 182 pages; 3664550.
11.
Structure prediction and visualization in molecular biology
by Poultney, Christopher S., Ph.D.  New York University. 2010: 131 pages; 3408352.
12.
Computational antibody structure prediction and antibody-antigen docking
by Sircar, Aroop, Ph.D.  The Johns Hopkins University. 2010: 220 pages; 3424831.
13.
Application of Graphical Models in Protein-Protein Interactions and Dynamics
by Vajdi Hoojghan, Amir, Ph.D.  University of Massachusetts Boston. 2018: 92 pages; 10982841.
15.
Mean Field Theory for Protein Side-chain Prediction: Improvements and Applications
by Francis-Lyon, Patricia A., Ph.D.  University of California, Davis. 2011: 146 pages; 3482127.
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Accurate prediction of protein function using GOstruct
by Sokolov, Artem, Ph.D.  Colorado State University. 2011: 90 pages; 3489918.
20.
Positive-Unlabeled Learning in the Context of Protein Function Prediction
by Youngs, Noah, Ph.D.  New York University. 2014: 160 pages; 3665223.
22.
RNA-protein structure classifiers incorporated into second-generation statistical potentials
by Kimura, Takayuki, M.S.  San Jose State University. 2016: 145 pages; 10241445.
23.
Automatic Localization of Protein Function Labels to Specific Regions within the Sequence
by Koo, Da Chen Emily, Ph.D.  New York University. 2019: 188 pages; 13810735.
24.
Exploring Structure and Function Relationships of the Solute Carrier Protein Family in Disease
by Keathley, Russell Hudson, M.S.  Icahn School of Medicine at Mount Sinai. 2018: 51 pages; 10931576.
25.
Mechanism of G protein-coupled receptor kinase binding and activation by G protein-coupled receptors
by Pao, Christina S., Ph.D.  Thomas Jefferson University. 2007: 144 pages; 3240653.
26.
Nuclear magnetic resonance study of ribonucleic acid tertiary structures
by Harris, Steven, Ph.D.  The University of Oklahoma. 2011: 148 pages; 3454375.
27.
Integrating protein similarity networks and orthogonal information for understanding protein origins and function
by Barber, Alan Edgel, II, Ph.D.  University of California, San Francisco. 2012: 602 pages; 3553805.
29.
Physics-based design of protein -ligand binding
by Boas, F. Edward, Ph.D.  Stanford University. 2008: 127 pages; 3313808.
30.
Insights into Protein-Protein Interactions within the Bacterial Flagellar Motor C-Ring
by Levenson, Robert Herman, Ph.D.  University of California, Santa Barbara. 2014: 272 pages; 3618776.
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