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1.
Applying Evolutionary Computation and Ensemble Approaches to Protein Contact Map and Protein Function Determination
by Chapman, Samuel D., Ph.D.  North Carolina Agricultural and Technical State University. 2016: 153 pages; 10191042.
2.
Mean Field Theory for Protein Side-chain Prediction: Improvements and Applications
by Francis-Lyon, Patricia A., Ph.D.  University of California, Davis. 2011: 146 pages; 3482127.
5.
Accurate prediction of protein function using GOstruct
by Sokolov, Artem, Ph.D.  Colorado State University. 2011: 90 pages; 3489918.
6.
Positive-Unlabeled Learning in the Context of Protein Function Prediction
by Youngs, Noah, Ph.D.  New York University. 2014: 160 pages; 3665223.
7.
Structure Prediction and Variant Interpretation of Membrane Proteins Aided by Machine Learning Algorithms
by Li, Bian, Ph.D.  Vanderbilt University. 2018: 192 pages; 13917125.
8.
Characterization of protein function using automated computational methods
by Wu, Shirley, Ph.D.  Stanford University. 2009: 179 pages; 3364515.
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Application of Graphical Models in Protein-Protein Interactions and Dynamics
by Vajdi Hoojghan, Amir, Ph.D.  University of Massachusetts Boston. 2018: 92 pages; 10982841.
12.
The effects of extremes of ph on the growth and transcriptomic profiles of three haloarchaea
by Moran-Reyna, Aida, M.S.  The University of Alabama at Birmingham. 2013: 81 pages; 1543888.
14.
Link Discovery through Iterative Link Classification: Towards a Real-Time Analysis of Graph Evolution
by Pusala, Murali Krishna, Ph.D.  University of Louisiana at Lafayette. 2018: 116 pages; 10846556.
15.
Characterization of protein residue surface accessibility using sequence homology
by Mishra, Radhika Pallavi, M.S.  San Jose State University. 2010: 155 pages; 1477358.
16.
Statistical models for analyzing human genetic variation
by Sankararaman, Sriram, Ph.D.  University of California, Berkeley. 2010: 164 pages; 3413553.
17.
Structure prediction and visualization in molecular biology
by Poultney, Christopher S., Ph.D.  New York University. 2010: 131 pages; 3408352.
18.
Physics-based design of protein -ligand binding
by Boas, F. Edward, Ph.D.  Stanford University. 2008: 127 pages; 3313808.
19.
A Framework for Scientific Discovery through Video Games
by Cooper, Seth, Ph.D.  University of Washington. 2011: 128 pages; 3501867.
20.
Computational Studies of Proteins: Dynamics and Interactions with Small Molecules
by Park, Min Sun, Ph.D.  University of Rochester. 2011: 109 pages; 3458547.
22.
Computational protein design with multiple functional and structural constraints
by Humphris, Elisabeth Lyn, Ph.D.  University of California, San Francisco. 2009: 189 pages; 3390110.
23.
Development of Computer Aided Drug Design Algorithms and Application to the APOBEC3 Family of Proteins
by Wagner, Jeffrey Robert Rothfeld, Ph.D.  University of California, San Diego. 2018: 143 pages; 10747265.
25.
Regulation by phosphorylation from an atomic perspective
by Narayanan, Arjun, Ph.D.  University of California, San Francisco. 2009: 156 pages; 3390105.
26.
Clustering of Large-Scale Protein Datasets
by Abnousi, Armen, Ph.D.  Washington State University. 2018: 118 pages; 10641432.
27.
Identification of microRNA targets
by Krek, Azra, Ph.D.  New York University. 2009: 92 pages; 3365704.
28.
Model systems for molecular docking: Understanding molecular recognition in polar and charged binding sites
by Boyce, Sarah Emily, Ph.D.  University of California, San Francisco. 2009: 257 pages; 3390113.
29.
Computational antibody structure prediction and antibody-antigen docking
by Sircar, Aroop, Ph.D.  The Johns Hopkins University. 2010: 220 pages; 3424831.
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