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1.
Efficient construction of accurate multiple alignments and large-scale phylogenies
by Wheeler, Travis John, Ph.D.  The University of Arizona. 2009: 185 pages; 3369689.
2.
A RADseq Phylogeny of Barleria (Acanthaceae) Resolves Fine-scale Relationships
by Comito, Robert P., M.S.  California State University, Long Beach. 2019: 88 pages; 13902604.
3.
Systematics and phylogeny of arcoid bivalves (Arcoida: Pteriomorphia: Bivalvia)
by Crowley, Louise M., Ph.D.  City University of New York. 2009: 376 pages; 3354658.
4.
Plant Phylogeny Affects the Structure and Function of the Rhizosphere Microbiome
by Van Bel, Mikayla Anne, M.Sc.  California State University, Long Beach. 2020: 71 pages; 27833347.
5.
New Observations and Phylogeny of the Entomopathogenic Fungus Desmidiospora myrmecophila
by Saltamachia, Stephen J., M.S.  University of Louisiana at Lafayette. 2018: 38 pages; 10844649.
6.
The origins of diversity in frog communities: phylogeny, morphology, performance, and dispersal
by Moen, Daniel Steven, Ph.D.  State University of New York at Stony Brook. 2012: 379 pages; 3527697.
8.
A revised molecular phylogeny reveals polyphyly in Schistura (teleostei: Cypriniformes: nemacheilidae)
by Sgouros, Katherine, M.S.  Northeastern Illinois University. 2016: 47 pages; 10126825.
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14.
Inferring differential rates of diversification from phylogenies
by Moore, Brian Ross, Ph.D.  Yale University. 2007: 685 pages; 3293407.
15.
Phylogenomic Analysis of Fundulidae Using RNA-Sequencing Data
by Rodgers, Rachel, M.S.  Southern Illinois University at Edwardsville. 2017: 72 pages; 10265232.
16.
Cladistic Analysis of Juvenile and Adult Hominoid Cranial Shape Variables
by DiVito, Thomas A., II, M.A.  Florida Atlantic University. 2011: 77 pages; 1504156.
17.
Phylogenomic Framework of the Plant Family Acanthaceae
by Arias, Joshua Daniel, M.S.  California State University, Long Beach. 2019: 95 pages; 13899203.
18.
Inferring tumor evolution using computational phylogenetics
by Subramanian, Ayshwarya, Ph.D.  Carnegie Mellon University. 2013: 132 pages; 3575067.
20.
Analysis and Visualization of Local Phylogenetic Structure within Species
by Wang, Jeremy R., Ph.D.  The University of North Carolina at Chapel Hill. 2013: 154 pages; 3562960.
22.
Reconstructing the evolutionary history of RNA viruses using relaxed molecular clocks
by Wertheim, Joel Okrent, Ph.D.  The University of Arizona. 2009: 146 pages; 3378827.
23.
Using the Birth-Death Process to Infer Changes in the Pattern of Lineage Gain and Loss
by Hallinan, Nathaniel Malachi, Ph.D.  University of California, Berkeley. 2011: 203 pages; 3498974.
24.
Multi-gene phylogenetics to resolve key areas in the fly tree of life
by Trautwein, Michelle Denee, Ph.D.  North Carolina State University. 2009: 137 pages; 3377635.
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28.
Phylogenetic and coalescent approaches to understanding North American freshwater fish diversity
by Harrington, Richard Charles, Ph.D.  Yale University. 2012: 175 pages; 3535397.
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