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1.
Analysis and Visualization of Local Phylogenetic Structure within Species
by Wang, Jeremy R., Ph.D.  The University of North Carolina at Chapel Hill. 2013: 154 pages; 3562960.
2.
Phylogenomic Analysis of Fundulidae Using RNA-Sequencing Data
by Rodgers, Rachel, M.S.  Southern Illinois University at Edwardsville. 2017: 72 pages; 10265232.
4.
Reconstructing the evolutionary history of RNA viruses using relaxed molecular clocks
by Wertheim, Joel Okrent, Ph.D.  The University of Arizona. 2009: 146 pages; 3378827.
5.
Multi-gene phylogenetics to resolve key areas in the fly tree of life
by Trautwein, Michelle Denee, Ph.D.  North Carolina State University. 2009: 137 pages; 3377635.
6.
Using the Birth-Death Process to Infer Changes in the Pattern of Lineage Gain and Loss
by Hallinan, Nathaniel Malachi, Ph.D.  University of California, Berkeley. 2011: 203 pages; 3498974.
7.
Efficient construction of accurate multiple alignments and large-scale phylogenies
by Wheeler, Travis John, Ph.D.  The University of Arizona. 2009: 185 pages; 3369689.
8.
Cladistic Analysis of Juvenile and Adult Hominoid Cranial Shape Variables
by DiVito, Thomas A., II, M.A.  Florida Atlantic University. 2011: 77 pages; 1504156.
9.
Inferring tumor evolution using computational phylogenetics
by Subramanian, Ayshwarya, Ph.D.  Carnegie Mellon University. 2013: 132 pages; 3575067.
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Inferring differential rates of diversification from phylogenies
by Moore, Brian Ross, Ph.D.  Yale University. 2007: 685 pages; 3293407.
13.
Phylogenetic and coalescent approaches to understanding North American freshwater fish diversity
by Harrington, Richard Charles, Ph.D.  Yale University. 2012: 175 pages; 3535397.
16.
The evolution of carotenoid coloration and pigmentation in the New World blackbirds
by Friedman, Nicholas R., Ph.D.  University of Maryland, Baltimore County. 2013: 113 pages; 3563319.
18.
Molecular Phylogenetics and Species Divergence in Selected Pinnotheridae (Crustacea: Brachyura: Decapoda)
by Palacios Theil, Emma, Ph.D.  University of Louisiana at Lafayette. 2014: 245 pages; 3687699.
20.
Phylogenomics, Systematics, and Evolution within the Nudibranch Group Cladobranchia (Mollusca: Gastropoda)
by Goodheart, Jessica Ann Marie, Ph.D.  University of Maryland, College Park. 2017: 330 pages; 10640279.
22.
Regime shifts in ecology and evolution
by Boettiger, Carl, Ph.D.  University of California, Davis. 2012: 87 pages; 3555268.
23.
Platyrrhine phylogenetics with a focus on callitrichine life history adaptations
by Jameson, Natalie Mae, Ph.D.  Wayne State University. 2013: 199 pages; 3601745.
25.
Skeletal anatomy in the chondrichthyan tree of life
by Crawford, Callie Hendricks, M.S.  College of Charleston. 2014: 127 pages; 1585540.
26.
The origins of diversity in frog communities: phylogeny, morphology, performance, and dispersal
by Moen, Daniel Steven, Ph.D.  State University of New York at Stony Brook. 2012: 379 pages; 3527697.
27.
A revised molecular phylogeny reveals polyphyly in Schistura (teleostei: Cypriniformes: nemacheilidae)
by Sgouros, Katherine, M.S.  Northeastern Illinois University. 2016: 47 pages; 10126825.
28.
Evolutionary patterns in deep-sea mollusks
by Boyle, Elizabeth E., Ph.D.  University of Massachusetts Boston. 2011: 166 pages; 3457389.
29.
Intron position in RNA polymerase genes and their relationship to eukaryotic phylogenies
by Robinson, Matthew C., M.S.  East Carolina University. 2010: 90 pages; 1484138.
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