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2.
Efficient algorithms for phylogenetic post-analysis
by Pattengale, Nicholas Dylan, Ph.D.  The University of New Mexico. 2010: 131 pages; 3409376.
4.
Phylogenetic supertree methods
by Swenson, Michelle Dawn, Ph.D.  The University of Texas at Austin. 2009: 143 pages; 3615224.
5.
Reconstructing the evolutionary history of RNA viruses using relaxed molecular clocks
by Wertheim, Joel Okrent, Ph.D.  The University of Arizona. 2009: 146 pages; 3378827.
6.
Multi-gene phylogenetics to resolve key areas in the fly tree of life
by Trautwein, Michelle Denee, Ph.D.  North Carolina State University. 2009: 137 pages; 3377635.
7.
Intron position in RNA polymerase genes and their relationship to eukaryotic phylogenies
by Robinson, Matthew C., M.S.  East Carolina University. 2010: 90 pages; 1484138.
8.
Phylogenomic Framework of the Plant Family Acanthaceae
by Arias, Joshua Daniel, M.S.  California State University, Long Beach. 2019: 95 pages; 13899203.
9.
Analyzing comparative sequence data to understand genome function and evolution
by Prasad, Arjun B., Ph.D.  The George Washington University. 2010: 223 pages; 3389713.
11.
Phylogenetic and coalescent approaches to understanding North American freshwater fish diversity
by Harrington, Richard Charles, Ph.D.  Yale University. 2012: 175 pages; 3535397.
14.
Inferring differential rates of diversification from phylogenies
by Moore, Brian Ross, Ph.D.  Yale University. 2007: 685 pages; 3293407.
15.
Statistical phylogenetic methods with applications to virus evolution
by Westesson, Oscar, Ph.D.  University of California, Berkeley. 2012: 258 pages; 3555992.
16.
Analysis and Visualization of Local Phylogenetic Structure within Species
by Wang, Jeremy R., Ph.D.  The University of North Carolina at Chapel Hill. 2013: 154 pages; 3562960.
17.
Dinoflagellate genomic organization and phylogenetic marker discovery utilizing deep sequencing data
by Mendez, Gregory Scott, Ph.D.  University of Maryland, College Park. 2016: 102 pages; 10159160.
18.
Cladistic Analysis of Juvenile and Adult Hominoid Cranial Shape Variables
by DiVito, Thomas A., II, M.A.  Florida Atlantic University. 2011: 77 pages; 1504156.
19.
Inferring tumor evolution using computational phylogenetics
by Subramanian, Ayshwarya, Ph.D.  Carnegie Mellon University. 2013: 132 pages; 3575067.
20.
The evolutionary history of meiotic genes: Early origins by duplication and subsequent losses
by Pightling, Arthur William, Ph.D.  The University of Iowa. 2011: 254 pages; 3516665.
21.
Phylogenomic Analysis of Fundulidae Using RNA-Sequencing Data
by Rodgers, Rachel, M.S.  Southern Illinois University at Edwardsville. 2017: 72 pages; 10265232.
23.
Systematics and phylogeny of arcoid bivalves (Arcoida: Pteriomorphia: Bivalvia)
by Crowley, Louise M., Ph.D.  City University of New York. 2009: 376 pages; 3354658.
26.
Development and the Early Animal Fossil Record: Evolution and Phylogenetic Applications
by Tweedt, Sarah Maureen, Ph.D.  University of Maryland, College Park. 2016: 161 pages; 10255380.
27.
Comparative Biogeography of Dune-Restricted Insects in the Desert Southwest
by Van Dam, Matthew H., Ph.D.  University of California, Berkeley. 2013: 256 pages; 3640674.
28.
Regional phylogenetic analysis of the myology of primates and correlates in the human skeleton
by Kern, Michael William, M.A.  The George Washington University. 2012: 75 pages; 1513324.
29.
Understanding the diversity and community structure of bdelloid rotifer soil communities
by Robeson, Michael Scott, II, Ph.D.  University of Colorado at Boulder. 2012: 166 pages; 3527337.
30.
The phylogenetic position of Proconsul and catarrhine ancestral morphotypes
by Bales, Ashley, Ph.D.  New York University. 2016: 284 pages; 10192021.
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