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1.
Theory of Graph Traversal Edit Distance, Extensions, and Applications
by Ebrahimpour Boroojeny, Ali, M.S.  Colorado State University. 2019: 67 pages; 13812734.
2.
Genome assembly techniques
by Marcais, Guillaume, Ph.D.  University of Maryland, College Park. 2011: 119 pages; 3478881.
3.
Algorithms for Assembly Consolidation and Prediction of Large-Scale Genome Structures
by Zhu, Shenglong, Ph.D.  University of Notre Dame. 2019: 168 pages; 28187463.
4.
Genome Assembly: Novel Applications by Harnessing Emerging Sequencing Technologies and Graph Algorithms
by Koren, Sergey, Ph.D.  University of Maryland, College Park. 2012: 238 pages; 3517547.
5.
A Machine Learning Approach to Genome Assessment
by Thrash, Charles Adam, Ph.D.  Mississippi State University. 2019: 104 pages; 22583353.
7.
Genome-wide mapping and functional analysis of copy number variation in the human genome
by Haraksingh, Rajini Rani, Ph.D.  Yale University. 2012: 185 pages; 3525284.
9.
Exploring the Microbiome of the Mediterranean Sponge Aplysina aerophoba by Single-Cell and Metagenomics
by Slaby, Beate Magdalena, Ph.D.  Bayerische Julius-Maximilians-Universitaet Wuerzburg (Germany). 2017: 132 pages; 10664597.
10.
Finding duplication events using GenomeVectorizer
by Kochetkova, Elena, M.S.  San Jose State University. 2010: 58 pages; 1488131.
13.
Evolutionary inferences from genome-wide data in primates
by Meyer, Wynn, Ph.D.  The University of Chicago. 2013: 226 pages; 3595949.
14.
Inferring dinoflagellate genome structure, function, and evolution from short-read high-throughput RNA-Seq
by Gibbons, Theodore Robert, Ph.D.  University of Maryland, College Park. 2015: 132 pages; 10011582.
15.
Meiotic Drive and Rapid Genome Evolution in Drosophila
by Chang, Ching-Ho, Ph.D.  University of Rochester. 2020: 234 pages; 27742341.
16.
Assembling improved gene annotations in Clostridium acetobutylicum with RNA sequencing
by Ralston, Matthew T., M.S.  University of Delaware. 2015: 152 pages; 1585177.
17.
Clustering algorithms for next-generation sequencing data from heterogenous populations
by Prabhakara, Shruthi, Ph.D.  The Pennsylvania State University. 2012: 126 pages; 3737327.
18.
Algorithms for DNA Sequence Assembly and Motif Search
by Dinh, Hieu Trung, Ph.D.  University of Connecticut. 2012: 95 pages; 3533974.
20.
Computer assisted design for synthetic biology
by Richardson, Sarah M., Ph.D.  The Johns Hopkins University. 2011: 174 pages; 3528553.
21.
Genetic and Biochemical Studies of Photosystem II Assembly
by Calderon, Robert Harry, Ph.D.  University of California, Berkeley. 2015: 73 pages; 10186537.
23.
Investigation of Mechanisms of Histone H3.3 Chromatin Assembly and Epigenetic Regulation
by Shastrula, Prashanth Krishna, Ph.D.  University of the Sciences in Philadelphia. 2018: 128 pages; 13850244.
24.
Coarse-grained Simulations of Viral Assembly
by Elrad, Oren M., Ph.D.  Brandeis University. 2011: 127 pages; 3494429.
25.
Metagenomics Adds Unrecognized Lineages to the Tree of Life and Enables a Genome-Resolved View of Microbiome Dynamics
by Brown, Christopher Thomas, Ph.D.  University of California, Berkeley. 2016: 162 pages; 10251228.
26.
A flexible comparative genomics framework for integrating heterogeneous sequence data
by Regier, Allison Ann Penner, Ph.D.  University of Notre Dame. 2011: 102 pages; 3496613.
27.
Genome-Resolved Meta-Omics Analyses of Microbial Interactions in Mining-Impacted Systems
by Kantor, Rose Simone, Ph.D.  University of California, Berkeley. 2016: 125 pages; 10251153.
28.
Romancing the gene: The human genome as our 5 million-year-old story
by Clogston, Christi L., Ph.D.  Pacifica Graduate Institute. 2009: 245 pages; 3486442.
29.
Investigation of the Podophyllotoxin Producing Species P. peltatum and P. podophylli
by Brown-Domenick, Lauren Jennifer, Ph.D.  University of the Sciences in Philadelphia. 2017: 106 pages; 10692982.
30.
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