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1.
Genome assembly techniques
by Marcais, Guillaume, Ph.D.  University of Maryland, College Park. 2011: 119 pages; 3478881.
2.
Genome Assembly: Novel Applications by Harnessing Emerging Sequencing Technologies and Graph Algorithms
by Koren, Sergey, Ph.D.  University of Maryland, College Park. 2012: 238 pages; 3517547.
3.
A Machine Learning Approach to Genome Assessment
by Thrash, Charles Adam, Ph.D.  Mississippi State University. 2019: 104 pages; 22583353.
4.
A flexible comparative genomics framework for integrating heterogeneous sequence data
by Regier, Allison Ann Penner, Ph.D.  University of Notre Dame. 2011: 102 pages; 3496613.
5.
Theory of Graph Traversal Edit Distance, Extensions, and Applications
by Ebrahimpour Boroojeny, Ali, M.S.  Colorado State University. 2019: 67 pages; 13812734.
6.
Assembling improved gene annotations in Clostridium acetobutylicum with RNA sequencing
by Ralston, Matthew T., M.S.  University of Delaware. 2015: 152 pages; 1585177.
8.
Analyzing Longitudinal Isolates in the Age of Affordable Sequencing
by Pekar, Jonathan Eugene, M.S.  University of California, San Diego. 2018: 55 pages; 10842733.
11.
Evolutionary inferences from genome-wide data in primates
by Meyer, Wynn, Ph.D.  The University of Chicago. 2013: 226 pages; 3595949.
12.
Metagenomics Adds Unrecognized Lineages to the Tree of Life and Enables a Genome-Resolved View of Microbiome Dynamics
by Brown, Christopher Thomas, Ph.D.  University of California, Berkeley. 2016: 162 pages; 10251228.
13.
Inferring dinoflagellate genome structure, function, and evolution from short-read high-throughput RNA-Seq
by Gibbons, Theodore Robert, Ph.D.  University of Maryland, College Park. 2015: 132 pages; 10011582.
15.
Evolution of sex-biased expression in Caenorhabditis
by Thomas, Cristel G., Ph.D.  University of Maryland, College Park. 2011: 183 pages; 3495443.
16.
Computer assisted design for synthetic biology
by Richardson, Sarah M., Ph.D.  The Johns Hopkins University. 2011: 174 pages; 3528553.
18.
Investigation of Mechanisms of Histone H3.3 Chromatin Assembly and Epigenetic Regulation
by Shastrula, Prashanth Krishna, Ph.D.  University of the Sciences in Philadelphia. 2018: 128 pages; 13850244.
20.
Clustering, searching and evaluating biological sequence data
by Ghodsi, Mohammadreza, Ph.D.  University of Maryland, College Park. 2012: 104 pages; 3543455.
21.
Zinc finger nucleases: Custom enzymes for DNA engineering
by Tovkach, Andriy, Ph.D.  State University of New York at Stony Brook. 2009: 139 pages; 3393672.
22.
Global Diversity and Function of Bacteria Associated with Wild and Domesticated Chickpea Root Nodules
by Greenlon, Alex, Ph.D.  University of California, Davis. 2018: 166 pages; 10837756.
23.
Coarse-grained Simulations of Viral Assembly
by Elrad, Oren M., Ph.D.  Brandeis University. 2011: 127 pages; 3494429.
24.
Genetic and Developmental Analysis of Evolved Stickleback Gill Raker Reduction
by Glazer, Andrew Michael, Ph.D.  University of California, Berkeley. 2015: 183 pages; 10186673.
26.
Venomics and Functional Analysis of Venom From the Emerald Jewel Wasp, Ampulex compressa
by Arvidson, Ryan Scott, Ph.D.  University of California, Riverside. 2016: 196 pages; 10153650.
27.
Diversity, Form, and Function Within the Marine Mammal Microbiota
by Dudek, Natasha K., Ph.D.  University of California, Santa Cruz. 2018: 203 pages; 10929175.
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29.
Clustering algorithms for next-generation sequencing data from heterogenous populations
by Prabhakara, Shruthi, Ph.D.  The Pennsylvania State University. 2012: 126 pages; 3737327.
30.
Investigation of the Podophyllotoxin Producing Species P. peltatum and P. podophylli
by Brown-Domenick, Lauren Jennifer, Ph.D.  University of the Sciences in Philadelphia. 2017: 106 pages; 10692982.
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