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1.
Analyzing comparative sequence data to understand genome function and evolution
by Prasad, Arjun B., Ph.D.  The George Washington University. 2010: 223 pages; 3389713.
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Structural RNA homology search and alignment using covariance models
by Nawrocki, Eric Paul, Ph.D.  Washington University in St. Louis. 2009: 281 pages; 3372748.
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A flexible comparative genomics framework for integrating heterogeneous sequence data
by Regier, Allison Ann Penner, Ph.D.  University of Notre Dame. 2011: 102 pages; 3496613.
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Comparative Analysis of Tandem Repeats from Eukaryotic Genomes: Insight in Centromere Evolution
by Melters, Daniel Patrick, Ph.D.  University of California, Davis. 2013: 125 pages; 3602160.
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Phylogenomic Analysis of Fundulidae Using RNA-Sequencing Data
by Rodgers, Rachel, M.S.  Southern Illinois University at Edwardsville. 2017: 72 pages; 10265232.
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Comparative Genomic and Transcriptional Analyses of Magnaporthe oryzae and other Eukaryotes
by Sailsbery, Joshua Kent, Ph.D.  North Carolina State University. 2011: 255 pages; 3497188.
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The viral genomics revolution: Big data approaches to basic viral research, surveillance, and vaccine development
by Schobel, Seth Adam Micah, Ph.D.  University of Maryland, College Park. 2015: 208 pages; 10011480.
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Genomics and ecology of integrative conjugative elements (ICE) in Vibrio cholerae
by Taviani, Elisa, Ph.D.  University of Maryland, College Park. 2010: 215 pages; 3461421.
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Modeling and simulation of vertebrate limb development and algorithms for comparative genomics
by Christley, Scott, Ph.D.  University of Notre Dame. 2008: 188 pages; 3436465.
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Analysis and Visualization of Local Phylogenetic Structure within Species
by Wang, Jeremy R., Ph.D.  The University of North Carolina at Chapel Hill. 2013: 154 pages; 3562960.
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Characterizing the earliest living systems through comparative bioinformatics
by Goldman, Aaron D., Ph.D.  University of Washington. 2010: 104 pages; 3424278.
17.
Platyrrhine phylogenetics with a focus on callitrichine life history adaptations
by Jameson, Natalie Mae, Ph.D.  Wayne State University. 2013: 199 pages; 3601745.
18.
Genomic Insights: Comparative Genomics in the Big Data Age
by Haug-Baltzell, Asher K., Ph.D.  The University of Arizona. 2018: 146 pages; 10745700.
19.
The evolution of BARREN INFLORESCENCE1 and related AUX/IAA genes in angiosperms
by Child, Robert Joseph, M.S.  California State University, Long Beach. 2013: 82 pages; 1527538.
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Genomic analysis of a major seed protein/oil QTL region on soybean linkage group I
by Joseph, Bindu, Ph.D.  Iowa State University. 2009: 147 pages; 3360419.
22.
Introns and alternative splicing in choanoflagellates
by Westbrook, Marjorie Wright, Ph.D.  University of California, Berkeley. 2011: 129 pages; 3498903.
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Comparative audiation difficulty of tonal, rhythm, and melodic patterns among grade 4 students
by Danahy, Alan P., M.M.E.  University of South Carolina. 2013: 92 pages; 1550840.
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Viral community dynamics and functional specialization in the Pacific Ocean
by Hurwitz, Bonnie L., Ph.D.  The University of Arizona. 2012: 201 pages; 3547321.
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A comparative analysis of the binding affinity of HIV-1 reverse transcriptase to DNA vs. RNA substrates
by Olimpo, Jeffrey T., Jr., M.S.  University of Maryland, College Park. 2010: 75 pages; 1482521.
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Metagenomics Adds Unrecognized Lineages to the Tree of Life and Enables a Genome-Resolved View of Microbiome Dynamics
by Brown, Christopher Thomas, Ph.D.  University of California, Berkeley. 2016: 162 pages; 10251228.
28.
Improving Multiple Sequence Alignments by Revising Sequence Families with Alignment Scoring Approaches
by Levchuk, Aleksandr Olegovich, M.S.  University of California, Riverside. 2011: 72 pages; 1505602.
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Grammatical formalisms for RNA structure analysis
by Al Seesi, Sahar, Ph.D.  University of Connecticut. 2010: 121 pages; 3420201.
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Clustering algorithms for next-generation sequencing data from heterogenous populations
by Prabhakara, Shruthi, Ph.D.  The Pennsylvania State University. 2012: 126 pages; 3737327.
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