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1.
Enabling Data-Guided Evaluation of Bioinformatics Workflow Quality
by McDade, Kevin Kristopher, Ph.D.  University of Pittsburgh. 2017: 160 pages; 10645872.
2.
Structure-Preserving Rearrangements: Algorithms for Structural Comparison and Protein Analysis
by Bliven, Spencer Edward, Ph.D.  University of California, San Diego. 2015: 159 pages; 3716489.
3.
Feature selection techniques and applications in bioinformatics
by Dittman, David, M.S.  Florida Atlantic University. 2011: 147 pages; 1504155.
5.
Data-mart integration of the proteome
by Vyas, Jay, Ph.D.  University of Connecticut. 2012: 114 pages; 3510543.
6.
Applying Evolutionary Computation and Ensemble Approaches to Protein Contact Map and Protein Function Determination
by Chapman, Samuel D., Ph.D.  North Carolina Agricultural and Technical State University. 2016: 153 pages; 10191042.
7.
A multiscale, geometric algorithm for non-parametric data exploration with an application to genomic data
by McQuown, Joseph, Ph.D.  State University of New York at Stony Brook. 2007: 105 pages; 3337616.
8.
Identification of Novel Regulators of Colorectal Adenocarcinoma and Head and Neck Squamous Cell Carcinoma
by French, Christi Lynn, Ph.D.  Vanderbilt University. 2015: 166 pages; 13834893.
11.
Identification of drug sensitive gene motifs using "epigenetic profiles" derived from bioinformatics databases
by Nelson, Jonathan M., M.S.  The University of North Carolina at Greensboro. 2016: 87 pages; 10123750.
12.
Module-Based Analysis for "Omics" Data
by Wang, Zhi, Ph.D.  North Carolina State University. 2013: 187 pages; 3690212.
13.
Cancer Bioinformatics for Biomarker Discovery
by Webber, James Trubek, Ph.D.  University of California, San Francisco. 2017: 316 pages; 10604636.
14.
A flexible comparative genomics framework for integrating heterogeneous sequence data
by Regier, Allison Ann Penner, Ph.D.  University of Notre Dame. 2011: 102 pages; 3496613.
17.
Evolutionary coupling in multisubunit membrane protein complexes
by Natarajan, Shreedhar, Ph.D.  University of Illinois at Urbana-Champaign. 2008: 150 pages; 3314971.
18.
Characterizing the earliest living systems through comparative bioinformatics
by Goldman, Aaron D., Ph.D.  University of Washington. 2010: 104 pages; 3424278.
19.
Application of Graphical Models in Protein-Protein Interactions and Dynamics
by Vajdi Hoojghan, Amir, Ph.D.  University of Massachusetts Boston. 2018: 92 pages; 10982841.
20.
Bioinformatics Approaches to Genetic Abnormality Detection in Genomic Data
by Baugher, Joseph D., Ph.D.  The Johns Hopkins University. 2012: 109 pages; 3573113.
21.
Automatic Localization of Protein Function Labels to Specific Regions within the Sequence
by Koo, Da Chen Emily, Ph.D.  New York University. 2019: 188 pages; 13810735.
22.
Reduced HyperBF networks: Practical optimization, regularization, and applications in bioinformatics
by Mahdi, Rami Nezar, Ph.D.  University of Louisville. 2010: 119 pages; 3415069.
23.
Genome Assembly: Novel Applications by Harnessing Emerging Sequencing Technologies and Graph Algorithms
by Koren, Sergey, Ph.D.  University of Maryland, College Park. 2012: 238 pages; 3517547.
25.
Remote Homology Detection in Proteins Using Graphical Models
by Daniels, Noah Manus, Ph.D.  Tufts University. 2013: 122 pages; 3563611.
26.
Accurate prediction of protein function using GOstruct
by Sokolov, Artem, Ph.D.  Colorado State University. 2011: 90 pages; 3489918.
27.
Studying Low Complexity Structures in Bioinformatics Data Analysis of Biological and Biomedical Data
by Causey, Jason L., Ph.D.  University of Arkansas at Little Rock. 2017: 100 pages; 10750808.
28.
A bioinformatics approach to identifying novel genes involved in ebolavirus entry
by Kondratowicz, Andrew Steven, Ph.D.  The University of Iowa. 2011: 172 pages; 3608741.
29.
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