GenomeVectorizer was successfully applied to study NBS-LRR genes and duplication events in Glycine max (soybean). The images of NBS-LRR genes were generated at 50, 60, and 70 percent identity. Images also showed the relationships between the duplication events. At a glance, it was easy to determine that duplication regions include almost half of the genome.
Currently, the user can generate an image at a specified percent identity, highlight gene relationships by clicking on the identity value inside the identity matrix, visit a gene’s database entry, and drag chromosomes away from each other.
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|Advisor:||Lin, Tsau Y.|
|Commitee:||Louie, Eric, Martin, Johnny|
|School:||San Jose State University|
|School Location:||United States -- California|
|Source:||MAI 49/03M, Masters Abstracts International|
|Subjects:||Genetics, Bioinformatics, Computer science|
|Keywords:||Finding genome duplication events, Genome duplication, Genome visualization, Scientific visualization, Visualization|
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