Dissertation/Thesis Abstract

An Analysis of Artificial Rhodopsin Mimics Using Multiconfigurational Ab Initio Computations
by Huntress, Mark, Ph.D., Bowling Green State University, 2012, 120; 10631092
Abstract (Summary)

Rhodopsin proteins are found in a wide range of organisms and perform a variety of functions. Vertebrate rhodopsins signal the G-protein transducin in the first step of the visual process while microbial rhodopsins can act as ion pumps or trigger phototaxis. In all varieties it is the retinyl chromophore that endows function to the protein by undergoing a light-initiated isomerization. Using bottom-up engineering, the retinyl chromophore has previously been incorporated into protein frameworks based on Cellular Retinoic Acid Binding Protein II (CRABPII). Two of these “rhodopsin mimics” are studied in this work.

A quantum mechanics / molecular mechanics protocol based on ab initio multiconfigurational quantum chemistry was constructed to model the spectral and dynamic features of rhodopsin mimics. The accuracy of the models is established by showing that computations reproduce the observed absorption λamax of both mutants. The mechanism of spectral tuning is investigated in mutants incorporating a variety of forms of retinyl chromophore, including both the protonated and deprotonated all-trans Schiff base chromophore and non-covalently bound retinal. Exploration of the excited state potential energy surface reveal two minima from which fluorescence can occur in the R132K:R111L:L121E (KLE) mutant of CRABPII, findings which were supported by ultrafast transient absorption spectra that resolved two different evolving S1 populations. The KLE mutant is compared to solvated protonated all-trans retinal Schiff base (PSBAT) and both systems are found to be highly similar in terms of calculated absorption λamax and possible photoreactivity, as ascertained from relaxed scans performed on the KLE mutant.

Indexing (document details)
Advisor: Olivucci, Massimo
Commitee: Lee, Jong Kwan, Leontis, Neocles, Tarnovsky, Alexander
School: Bowling Green State University
Department: Photochemical Sciences
School Location: United States -- Ohio
Source: DAI-B 78/11(E), Dissertation Abstracts International
Source Type: DISSERTATION
Subjects: Chemistry
Keywords: CASSCF, CRABPII, QM/MM, Quantum chemistry, Rhodopsin
Publication Number: 10631092
ISBN: 978-0-355-01390-0
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